Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   HHJ99_RS05360 Genome accession   NZ_CP051643
Coordinates   1084198..1084773 (-) Length   191 a.a.
NCBI ID   WP_002441902.1    Uniprot ID   -
Organism   Staphylococcus caprae strain SY333     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079198..1089773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ99_RS05335 (HHJ99_05325) - 1080632..1081570 (+) 939 WP_037541296.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  HHJ99_RS05340 (HHJ99_05330) - 1081626..1082177 (-) 552 WP_037541294.1 GNAT family N-acetyltransferase -
  HHJ99_RS05345 (HHJ99_05335) - 1082966..1083418 (-) 453 WP_049401915.1 hypothetical protein -
  HHJ99_RS05360 (HHJ99_05350) comK/comK1 1084198..1084773 (-) 576 WP_002441902.1 competence protein ComK Regulator
  HHJ99_RS05365 (HHJ99_05355) - 1084994..1085212 (+) 219 WP_002441901.1 IDEAL domain-containing protein -
  HHJ99_RS05370 (HHJ99_05360) - 1085290..1086276 (-) 987 WP_002441899.1 lipoate--protein ligase -
  HHJ99_RS05375 (HHJ99_05365) - 1086481..1086666 (+) 186 WP_002433441.1 DUF2187 family protein -
  HHJ99_RS05380 (HHJ99_05370) - 1086672..1087274 (+) 603 WP_002441897.1 CPBP family glutamic-type intramembrane protease -
  HHJ99_RS05385 (HHJ99_05375) - 1087370..1088878 (-) 1509 WP_002441895.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22864.97 Da        Isoelectric Point: 9.4349

>NTDB_id=440210 HHJ99_RS05360 WP_002441902.1 1084198..1084773(-) (comK/comK1) [Staphylococcus caprae strain SY333]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKTRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGITSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIESIKELKNRKSKITFANNESFILNVSYHSLWHQYTNAIIYYYMVDKQARM
KSNDPEQPIDYNQSSLNIFEALSRYSLFEEK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=440210 HHJ99_RS05360 WP_002441902.1 1084198..1084773(-) (comK/comK1) [Staphylococcus caprae strain SY333]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGACATGTTAATTCGCCCAAGGTATGATGAATATCAACA
AACTTCAGGAGCTGAGATTATTAGATTTGATAAAACTAGAAAGGAGAGTCCTTTTAAAGTACAAAGAATTATTGAAAGGT
CTTGCAAATTTTATGGTAATAGCTATTTGAGCAAGAAGTCTGAAACTAATCGAATTACTGGTATCACTAGTAAACCACCT
ATTTTACTTACTCCTTTATTTCCAACTTACTTTTTCCCAACTCATTCTGATCGACAAGAAGAAAATATATGGATTAACAT
GCATTATATTGAAAGTATTAAAGAACTTAAAAACCGTAAAAGTAAAATCACATTTGCTAATAATGAATCATTTATATTAA
ATGTTTCGTATCATAGTTTATGGCATCAATATACGAATGCAATTATTTATTACTACATGGTCGATAAGCAAGCGCGTATG
AAATCAAATGATCCTGAGCAACCCATTGACTATAATCAATCCTCATTAAATATTTTCGAAGCTTTATCTAGATATTCTCT
TTTTGAAGAGAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

78.191

98.429

0.77
  comK/comK1 Staphylococcus aureus N315

78.191

98.429

0.77