Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IQS14_RS21650 Genome accession   NZ_CP063492
Coordinates   4461781..4462518 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EF5-18-41     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4456781..4467518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS14_RS21635 (IQS14_21640) clpC 4457235..4459808 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IQS14_RS21640 (IQS14_21645) yfiH 4459938..4460669 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  IQS14_RS21645 (IQS14_21650) rluD 4460666..4461646 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IQS14_RS21650 (IQS14_21655) comL 4461781..4462518 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IQS14_RS21655 (IQS14_21660) raiA 4462789..4463130 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  IQS14_RS21660 (IQS14_21665) pheL 4463234..4463281 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IQS14_RS21665 (IQS14_21670) pheA 4463380..4464540 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  IQS14_RS21670 (IQS14_21675) tyrA 4464583..4465704 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IQS14_RS21675 (IQS14_21680) aroF 4465715..4466785 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IQS14_RS21680 (IQS14_21685) yfiL 4466994..4467359 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=440171 IQS14_RS21650 WP_000197686.1 4461781..4462518(+) (comL) [Escherichia coli strain EF5-18-41]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=440171 IQS14_RS21650 WP_000197686.1 4461781..4462518(+) (comL) [Escherichia coli strain EF5-18-41]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAATCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376