Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IQS14_RS17760 Genome accession   NZ_CP063492
Coordinates   3646866..3647522 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain EF5-18-41     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641866..3652522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS14_RS17730 (IQS14_17735) yecA 3643117..3643782 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  IQS14_RS17750 (IQS14_17755) pgsA 3644432..3644980 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQS14_RS17755 (IQS14_17760) uvrC 3645037..3646869 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IQS14_RS17760 (IQS14_17765) letA 3646866..3647522 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IQS14_RS17765 (IQS14_17770) yecU 3647818..3647994 (+) 177 WP_000590347.1 protein YecU -
  IQS14_RS17770 (IQS14_17775) yecF 3647981..3648205 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  IQS14_RS17775 (IQS14_17780) sdiA 3648273..3648995 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  IQS14_RS17780 (IQS14_17785) tcyN 3649225..3649977 (-) 753 WP_001272982.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IQS14_RS17785 (IQS14_17790) tcyL 3649974..3650642 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  IQS14_RS17790 (IQS14_17795) dcyD 3650657..3651643 (-) 987 WP_001128228.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=440158 IQS14_RS17760 WP_000611328.1 3646866..3647522(-) (letA) [Escherichia coli strain EF5-18-41]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=440158 IQS14_RS17760 WP_000611328.1 3646866..3647522(-) (letA) [Escherichia coli strain EF5-18-41]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTAGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482