Detailed information NTG0440018

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: IQS21_RS20050
• Genome accession: NZ_CP063483
• Coordinates: 4178195..4179469 (-)
• Length: 424 a.a.
• NCBI ID: WP_039268318.1
• Uniprot ID: -
• Organism: Escherichia coli strain EM03-18-08
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4173195..4184469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS21_RS20040 (IQS21_20065)	hupB	4175172..4175462 (-)	291	WP_254892905.1	nucleoid-associated protein HU-beta	-
IQS21_RS20045 (IQS21_20070)	lon	4175653..4178007 (-)	2355	WP_001295325.1	endopeptidase La	-
IQS21_RS20050 (IQS21_20075)	clpX	4178195..4179469 (-)	1275	WP_039268318.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
IQS21_RS20055 (IQS21_20080)	clpP	4179595..4180218 (-)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IQS21_RS20060 (IQS21_20085)	tig	4180464..4181762 (-)	1299	WP_001198386.1	trigger factor	-
IQS21_RS20065 (IQS21_20090)	bolA	4182106..4182423 (-)	318	WP_000973448.1	transcriptional regulator BolA	-
IQS21_RS20070 (IQS21_20095)	yajG	4182728..4183306 (+)	579	WP_001295326.1	lipoprotein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46302.96 Da
• Isoelectric Point: 4.9280

>NTDB_id=440018 IQS21_RS20050 WP_039268318.1 4178195..4179469(-) (clpX) [Escherichia coli strain EM03-18-08]
MTDKRKDGSGKLLYCSFCGKSQHEVCKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=440018 IQS21_RS20050 WP_039268318.1 4178195..4179469(-) (clpX) [Escherichia coli strain EM03-18-08]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGTGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGATGTTCCGTTCACCATGGCCGACGCGACTACACTGACCGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAATGCGACTACGATGTCCAGAAAGCACAGCGTGGTATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCACCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTTATCCCTGAGTTTATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.85	94.575	0.566
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.147	96.226	0.531