Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAVC_RS04600 Genome accession   NC_016912
Coordinates   937727..938296 (-) Length   189 a.a.
NCBI ID   WP_000287271.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 932727..943296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS04580 (SAVC_04280) - 934232..935590 (+) 1359 WP_000021864.1 TrkH family potassium uptake protein -
  SAVC_RS04585 (SAVC_04285) - 935729..937240 (+) 1512 WP_000414177.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SAVC_RS04600 (SAVC_04290) comK/comK1 937727..938296 (-) 570 WP_000287271.1 competence protein ComK Regulator
  SAVC_RS04605 (SAVC_04295) - 938506..938724 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  SAVC_RS04610 (SAVC_04300) - 938805..939791 (-) 987 WP_000668820.1 lipoate--protein ligase -
  SAVC_RS04615 (SAVC_04305) - 939990..940166 (+) 177 WP_000214898.1 YkvS family protein -
  SAVC_RS04620 (SAVC_04310) - 940181..940783 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAVC_RS14485 - 941099..941161 (+) 63 WP_228764722.1 hypothetical protein -
  SAVC_RS04630 - 941700..941801 (+) 102 WP_001790623.1 hypothetical protein -
  SAVC_RS13870 - 941811..942083 (+) 273 WP_001790097.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22600.89 Da        Isoelectric Point: 9.8190

>NTDB_id=43980 SAVC_RS04600 WP_000287271.1 937727..938296(-) (comK/comK1) [Staphylococcus aureus subsp. aureus VC40]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAKTNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=43980 SAVC_RS04600 WP_000287271.1 937727..938296(-) (comK/comK1) [Staphylococcus aureus subsp. aureus VC40]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAAAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment