Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SAVC_RS04465 Genome accession   NC_016912
Coordinates   907235..908221 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902235..913221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS04440 (SAVC_04140) opp4B 902448..903410 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  SAVC_RS04445 (SAVC_04145) opp4C 903422..904303 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  SAVC_RS04450 (SAVC_04150) trpS 904345..905334 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAVC_RS04455 (SAVC_04155) spxA 905629..906024 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAVC_RS04460 (SAVC_04160) mecA 906395..907114 (+) 720 WP_001217730.1 adaptor protein MecA -
  SAVC_RS04465 (SAVC_04165) coiA 907235..908221 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  SAVC_RS04470 (SAVC_04170) pepF 908269..910077 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  SAVC_RS04475 (SAVC_04175) yjbH 910537..911343 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SAVC_RS04480 (SAVC_04180) - 911366..911731 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  SAVC_RS04485 (SAVC_04185) - 911835..912428 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SAVC_RS04490 (SAVC_04190) - 912614..912961 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=43979 SAVC_RS04465 WP_000959287.1 907235..908221(+) (coiA) [Staphylococcus aureus subsp. aureus VC40]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=43979 SAVC_RS04465 WP_000959287.1 907235..908221(+) (coiA) [Staphylococcus aureus subsp. aureus VC40]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment