Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IQS24_RS16400 Genome accession   NZ_CP063473
Coordinates   3396774..3397511 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EM18-18-42     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391774..3402511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS24_RS16385 (IQS24_16390) clpC 3392228..3394801 (-) 2574 WP_205595461.1 ATP-dependent chaperone ClpB Regulator
  IQS24_RS16390 (IQS24_16395) yfiH 3394931..3395662 (-) 732 WP_205595462.1 purine nucleoside phosphorylase YfiH -
  IQS24_RS16395 (IQS24_16400) rluD 3395659..3396639 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IQS24_RS16400 (IQS24_16405) comL 3396774..3397511 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IQS24_RS16405 (IQS24_16410) raiA 3397782..3398123 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IQS24_RS16410 (IQS24_16415) pheL 3398227..3398274 (+) 48 WP_010723158.1 phe operon leader peptide -
  IQS24_RS16415 (IQS24_16420) pheA 3398373..3399533 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IQS24_RS16420 (IQS24_16425) tyrA 3399576..3400697 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IQS24_RS16425 (IQS24_16430) aroF 3400708..3401778 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IQS24_RS16430 (IQS24_16435) yfiL 3401988..3402353 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=439748 IQS24_RS16400 WP_000197686.1 3396774..3397511(+) (comL) [Escherichia coli strain EM18-18-42]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=439748 IQS24_RS16400 WP_000197686.1 3396774..3397511(+) (comL) [Escherichia coli strain EM18-18-42]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376