Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG574_RS07085 Genome accession   NZ_CP051541
Coordinates   1491443..1492018 (-) Length   191 a.a.
NCBI ID   WP_165528984.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486443..1497018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS08020 - 1487284..1487364 (-) 81 Protein_1394 type II restriction endonuclease subunit M -
  HG574_RS07070 (HG574_07055) - 1487749..1488756 (+) 1008 WP_202144755.1 DNA adenine methylase -
  HG574_RS07075 (HG574_07060) - 1488760..1489899 (+) 1140 WP_202144756.1 DNA methyltransferase -
  HG574_RS07080 (HG574_07065) - 1489962..1491404 (+) 1443 WP_202144757.1 hypothetical protein -
  HG574_RS07085 (HG574_07070) comFC 1491443..1492018 (-) 576 WP_165528984.1 ComF family protein Machinery gene
  HG574_RS07090 (HG574_07075) tmk 1492006..1492581 (-) 576 WP_202144758.1 dTMP kinase -
  HG574_RS07095 (HG574_07080) coaD 1492583..1493056 (-) 474 WP_001169239.1 pantetheine-phosphate adenylyltransferase -
  HG574_RS07100 (HG574_07085) - 1493056..1493619 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HG574_RS07105 (HG574_07090) flgA 1493629..1494285 (-) 657 WP_202144759.1 flagellar basal body P-ring formation chaperone FlgA -
  HG574_RS07110 (HG574_07095) uvrD 1494282..1496327 (-) 2046 WP_202144760.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21325.93 Da        Isoelectric Point: 8.4503

>NTDB_id=439692 HG574_RS07085 WP_165528984.1 1491443..1492018(-) (comFC) [Helicobacter pylori strain LIM-001]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEMEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRMNNPRDFTFKGDENLDYFLLDDII
TTGATLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439692 HG574_RS07085 WP_165528984.1 1491443..1492018(-) (comFC) [Helicobacter pylori strain LIM-001]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCATTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATGGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATGAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTCTTACTAGATGACATTATC
ACCACCGGCGCCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361