Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG575_RS07000 | Genome accession | NZ_CP051540 |
| Coordinates | 1469233..1469808 (-) | Length | 191 a.a. |
| NCBI ID | WP_202164399.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-002 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1464233..1474808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG575_RS06990 (HG575_06990) | - | 1465959..1467164 (-) | 1206 | WP_202248108.1 | restriction endonuclease subunit S | - |
| HG575_RS06995 (HG575_06995) | - | 1467161..1469200 (-) | 2040 | WP_202248110.1 | N-6 DNA methylase | - |
| HG575_RS07000 (HG575_07000) | comFC | 1469233..1469808 (-) | 576 | WP_202164399.1 | ComF family protein | Machinery gene |
| HG575_RS07005 (HG575_07005) | tmk | 1469796..1470371 (-) | 576 | WP_202248112.1 | dTMP kinase | - |
| HG575_RS07010 (HG575_07010) | coaD | 1470373..1470846 (-) | 474 | WP_202248114.1 | pantetheine-phosphate adenylyltransferase | - |
| HG575_RS07015 (HG575_07015) | - | 1470846..1471409 (-) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| HG575_RS07020 (HG575_07020) | flgA | 1471419..1472075 (-) | 657 | WP_202248116.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG575_RS07025 (HG575_07025) | uvrD | 1472072..1474117 (-) | 2046 | WP_202248118.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21263.92 Da Isoelectric Point: 9.4455
>NTDB_id=439672 HG575_RS07000 WP_202164399.1 1469233..1469808(-) (comFC) [Helicobacter pylori strain LIM-002]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439672 HG575_RS07000 WP_202164399.1 1469233..1469808(-) (comFC) [Helicobacter pylori strain LIM-002]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATTGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |