Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG575_RS01930 Genome accession   NZ_CP051540
Coordinates   403654..404058 (+) Length   134 a.a.
NCBI ID   WP_202248738.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398654..409058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS01895 (HG575_01895) - 398832..399770 (-) 939 WP_202248732.1 tetraacyldisaccharide 4'-kinase -
  HG575_RS01900 (HG575_01900) - 399767..400549 (-) 783 WP_202248734.1 NAD+ synthase -
  HG575_RS01910 (HG575_01910) ilvC 400798..401790 (+) 993 WP_202248736.1 ketol-acid reductoisomerase -
  HG575_RS01915 (HG575_01915) minD 401814..402620 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HG575_RS01920 (HG575_01920) minE 402617..402850 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG575_RS01925 (HG575_01925) dprA 402857..403657 (+) 801 WP_024368958.1 DNA-processing protein DprA Machinery gene
  HG575_RS01930 (HG575_01930) dprB 403654..404058 (+) 405 WP_202248738.1 Holliday junction resolvase RuvX Machinery gene
  HG575_RS01935 (HG575_01935) - 404188..404868 (+) 681 WP_202248740.1 tetratricopeptide repeat protein -
  HG575_RS01940 (HG575_01940) - 405063..405401 (+) 339 WP_202248742.1 hypothetical protein -
  HG575_RS01945 (HG575_01945) - 405385..405945 (+) 561 WP_202248744.1 hypothetical protein -
  HG575_RS01950 (HG575_01950) - 406079..406960 (-) 882 WP_202248746.1 RluA family pseudouridine synthase -
  HG575_RS01955 (HG575_01955) recJ 406960..408510 (-) 1551 WP_202248748.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15111.58 Da        Isoelectric Point: 9.1627

>NTDB_id=439664 HG575_RS01930 WP_202248738.1 403654..404058(+) (dprB) [Helicobacter pylori strain LIM-002]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQKVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439664 HG575_RS01930 WP_202248738.1 403654..404058(+) (dprB) [Helicobacter pylori strain LIM-002]
ATGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTACGCTTTTAAATGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGAGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGAAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955