Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG576_RS01670 Genome accession   NZ_CP051539
Coordinates   347054..347458 (+) Length   134 a.a.
NCBI ID   WP_202139016.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342054..352458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS01635 (HG576_01635) - 342232..343170 (-) 939 WP_000833925.1 tetraacyldisaccharide 4'-kinase -
  HG576_RS01640 (HG576_01640) - 343167..343949 (-) 783 WP_202139013.1 NAD+ synthase -
  HG576_RS01650 (HG576_01650) ilvC 344198..345190 (+) 993 WP_202139014.1 ketol-acid reductoisomerase -
  HG576_RS01655 (HG576_01655) minD 345214..346020 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HG576_RS01660 (HG576_01660) minE 346017..346250 (+) 234 WP_000051418.1 cell division topological specificity factor MinE -
  HG576_RS01665 (HG576_01665) dprA 346257..347057 (+) 801 WP_202139015.1 DNA-processing protein DprA Machinery gene
  HG576_RS01670 (HG576_01670) dprB 347054..347458 (+) 405 WP_202139016.1 Holliday junction resolvase RuvX Machinery gene
  HG576_RS01675 (HG576_01675) - 347593..348264 (+) 672 WP_202139017.1 tetratricopeptide repeat protein -
  HG576_RS01680 (HG576_01680) - 348379..348717 (+) 339 WP_078249626.1 hypothetical protein -
  HG576_RS01685 (HG576_01685) - 348701..349261 (+) 561 WP_001035890.1 hypothetical protein -
  HG576_RS01690 (HG576_01690) - 349405..350286 (-) 882 WP_078245179.1 RluA family pseudouridine synthase -
  HG576_RS01695 (HG576_01695) recJ 350286..351836 (-) 1551 WP_202139018.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15249.72 Da        Isoelectric Point: 8.1435

>NTDB_id=439642 HG576_RS01670 WP_202139016.1 347054..347458(+) (dprB) [Helicobacter pylori strain LIM-003]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILECYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439642 HG576_RS01670 WP_202139016.1 347054..347458(+) (dprB) [Helicobacter pylori strain LIM-003]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATCTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGTGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955