Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG578_RS06935 Genome accession   NZ_CP051537
Coordinates   1472767..1473342 (-) Length   191 a.a.
NCBI ID   WP_202134720.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467767..1478342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS07840 (HG578_06910) - 1469474..1470010 (-) 537 WP_338325757.1 restriction endonuclease subunit S -
  HG578_RS07845 (HG578_06915) - 1470046..1470702 (-) 657 WP_202134718.1 restriction endonuclease subunit S -
  HG578_RS06930 (HG578_06920) - 1470699..1472735 (-) 2037 WP_202134719.1 N-6 DNA methylase -
  HG578_RS06935 (HG578_06925) comFC 1472767..1473342 (-) 576 WP_202134720.1 ComF family protein Machinery gene
  HG578_RS06940 (HG578_06930) tmk 1473330..1473905 (-) 576 WP_202134721.1 dTMP kinase -
  HG578_RS06945 (HG578_06935) coaD 1473907..1474380 (-) 474 WP_001169257.1 pantetheine-phosphate adenylyltransferase -
  HG578_RS06950 (HG578_06940) - 1474380..1474943 (-) 564 WP_000780095.1 UbiX family flavin prenyltransferase -
  HG578_RS06955 (HG578_06945) flgA 1474953..1475609 (-) 657 WP_202134722.1 flagellar basal body P-ring formation chaperone FlgA -
  HG578_RS06960 (HG578_06950) uvrD 1475606..1477651 (-) 2046 WP_202135203.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21294.80 Da        Isoelectric Point: 8.4603

>NTDB_id=439630 HG578_RS06935 WP_202134720.1 1472767..1473342(-) (comFC) [Helicobacter pylori strain LIM-005]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRAINTISYAGKSLEFRTNHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439630 HG578_RS06935 WP_202134720.1 1472767..1473342(-) (comFC) [Helicobacter pylori strain LIM-005]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTCAAACCCCTTTGCTCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCGGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCTATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCATAAATACTATTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCACTAACCACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTCTTGCTAGATGATATTATT
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.194

100

0.932
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.979

100

0.372