Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG578_RS01655 Genome accession   NZ_CP051537
Coordinates   346648..347052 (+) Length   134 a.a.
NCBI ID   WP_202134950.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 341648..352052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS01620 (HG578_01620) - 341826..342764 (-) 939 WP_202134944.1 tetraacyldisaccharide 4'-kinase -
  HG578_RS01625 (HG578_01625) - 342761..343543 (-) 783 WP_202134945.1 NAD+ synthase -
  HG578_RS01635 (HG578_01635) ilvC 343792..344784 (+) 993 WP_202134946.1 ketol-acid reductoisomerase -
  HG578_RS01640 (HG578_01640) minD 344808..345614 (+) 807 WP_202134947.1 septum site-determining protein MinD -
  HG578_RS01645 (HG578_01645) minE 345611..345844 (+) 234 WP_202134948.1 cell division topological specificity factor MinE -
  HG578_RS01650 (HG578_01650) dprA 345851..346651 (+) 801 WP_202134949.1 DNA-processing protein DprA Machinery gene
  HG578_RS01655 (HG578_01655) dprB 346648..347052 (+) 405 WP_202134950.1 Holliday junction resolvase RuvX Machinery gene
  HG578_RS01660 (HG578_01660) - 347247..347765 (+) 519 WP_237393467.1 tetratricopeptide repeat protein -
  HG578_RS01665 (HG578_01665) - 347881..348219 (+) 339 WP_000699902.1 hypothetical protein -
  HG578_RS01670 (HG578_01670) - 348203..348763 (+) 561 WP_202134952.1 hypothetical protein -
  HG578_RS01675 (HG578_01675) - 348863..349744 (-) 882 WP_202134953.1 RluA family pseudouridine synthase -
  HG578_RS01680 (HG578_01680) recJ 349744..351294 (-) 1551 WP_202134954.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15190.51 Da        Isoelectric Point: 7.8028

>NTDB_id=439623 HG578_RS01655 WP_202134950.1 346648..347052(+) (dprB) [Helicobacter pylori strain LIM-005]
MILACDVGLKRIGIAALLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGNPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439623 HG578_RS01655 WP_202134950.1 346648..347052(+) (dprB) [Helicobacter pylori strain LIM-005]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTGTCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAATCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAACATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955