Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG580_RS07200 Genome accession   NZ_CP051536
Coordinates   1503045..1503620 (-) Length   191 a.a.
NCBI ID   WP_202145781.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-007     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498045..1508620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG580_RS07190 - 1499810..1500979 (-) 1170 WP_202145779.1 restriction endonuclease subunit S -
  HG580_RS07195 - 1500976..1503012 (-) 2037 WP_202145780.1 N-6 DNA methylase -
  HG580_RS07200 comFC 1503045..1503620 (-) 576 WP_202145781.1 ComF family protein Machinery gene
  HG580_RS07205 tmk 1503608..1504183 (-) 576 WP_202145782.1 dTMP kinase -
  HG580_RS07210 coaD 1504185..1504658 (-) 474 WP_202145783.1 pantetheine-phosphate adenylyltransferase -
  HG580_RS07215 - 1504658..1505221 (-) 564 WP_202145784.1 UbiX family flavin prenyltransferase -
  HG580_RS07220 flgA 1505231..1505887 (-) 657 WP_202145785.1 flagellar basal body P-ring formation chaperone FlgA -
  HG580_RS07225 uvrD 1505884..1507929 (-) 2046 WP_202145786.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21335.99 Da        Isoelectric Point: 9.4455

>NTDB_id=439610 HG580_RS07200 WP_202145781.1 1503045..1503620(-) (comFC) [Helicobacter pylori strain LIM-007]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLESVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439610 HG580_RS07200 WP_202145781.1 1503045..1503620(-) (comFC) [Helicobacter pylori strain LIM-007]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGAGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366