Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG581_RS07420 | Genome accession | NZ_CP051535 |
| Coordinates | 1567046..1567621 (+) | Length | 191 a.a. |
| NCBI ID | WP_202137973.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-008 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1562046..1572621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG581_RS07395 (HG581_07400) | uvrD | 1562737..1564782 (+) | 2046 | WP_202137970.1 | DNA helicase UvrD | - |
| HG581_RS07400 (HG581_07405) | flgA | 1564779..1565435 (+) | 657 | WP_202137971.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG581_RS07405 (HG581_07410) | - | 1565445..1566008 (+) | 564 | WP_000780142.1 | UbiX family flavin prenyltransferase | - |
| HG581_RS07410 (HG581_07415) | coaD | 1566008..1566481 (+) | 474 | WP_079362272.1 | pantetheine-phosphate adenylyltransferase | - |
| HG581_RS07415 (HG581_07420) | tmk | 1566483..1567058 (+) | 576 | WP_202137972.1 | dTMP kinase | - |
| HG581_RS07420 (HG581_07425) | comFC | 1567046..1567621 (+) | 576 | WP_202137973.1 | ComF family protein | Machinery gene |
| HG581_RS07425 (HG581_07430) | - | 1567655..1569400 (+) | 1746 | Protein_1470 | N-6 DNA methylase | - |
| HG581_RS07430 (HG581_07435) | - | 1569402..1569845 (+) | 444 | Protein_1471 | N-6 DNA methylase | - |
| HG581_RS07435 (HG581_07440) | - | 1569842..1571083 (+) | 1242 | WP_202137974.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21265.81 Da Isoelectric Point: 8.6823
>NTDB_id=439591 HG581_RS07420 WP_202137973.1 1567046..1567621(+) (comFC) [Helicobacter pylori strain LIM-008]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439591 HG581_RS07420 WP_202137973.1 1567046..1567621(+) (comFC) [Helicobacter pylori strain LIM-008]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |