Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG582_RS07250 | Genome accession | NZ_CP051534 |
| Coordinates | 1518931..1519506 (+) | Length | 191 a.a. |
| NCBI ID | WP_202143864.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-009 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1513931..1524506
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG582_RS07225 (HG582_07230) | uvrD | 1514622..1516667 (+) | 2046 | WP_202143861.1 | DNA helicase UvrD | - |
| HG582_RS07230 (HG582_07235) | flgA | 1516664..1517320 (+) | 657 | WP_202143862.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG582_RS07235 (HG582_07240) | - | 1517330..1517893 (+) | 564 | WP_000780142.1 | UbiX family flavin prenyltransferase | - |
| HG582_RS07240 (HG582_07245) | coaD | 1517893..1518366 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| HG582_RS07245 (HG582_07250) | tmk | 1518368..1518943 (+) | 576 | WP_202143863.1 | dTMP kinase | - |
| HG582_RS07250 (HG582_07255) | comFC | 1518931..1519506 (+) | 576 | WP_202143864.1 | ComF family protein | Machinery gene |
| HG582_RS07255 (HG582_07260) | - | 1519540..1521595 (+) | 2056 | Protein_1423 | N-6 DNA methylase | - |
| HG582_RS07260 (HG582_07265) | - | 1521592..1522846 (+) | 1255 | Protein_1424 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21387.04 Da Isoelectric Point: 9.4519
>NTDB_id=439568 HG582_RS07250 WP_202143864.1 1518931..1519506(+) (comFC) [Helicobacter pylori strain LIM-009]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRNFKFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIVLCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRTNNPRNFKFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIVLCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439568 HG582_RS07250 WP_202143864.1 1518931..1519506(+) (comFC) [Helicobacter pylori strain LIM-009]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTAAGGATTTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACAACCCACGGAATTTTAAATTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATAGTGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTAAGGATTTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAACAACCCACGGAATTTTAAATTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATAGTGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |