Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG582_RS01690 Genome accession   NZ_CP051534
Coordinates   349525..349929 (+) Length   134 a.a.
NCBI ID   WP_197301101.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344525..354929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS01655 (HG582_01660) - 344693..345631 (-) 939 WP_202144108.1 tetraacyldisaccharide 4'-kinase -
  HG582_RS01660 (HG582_01665) - 345638..346420 (-) 783 WP_202144109.1 NAD+ synthase -
  HG582_RS01670 (HG582_01675) ilvC 346669..347661 (+) 993 WP_202144110.1 ketol-acid reductoisomerase -
  HG582_RS01675 (HG582_01680) minD 347685..348491 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  HG582_RS01680 (HG582_01685) minE 348488..348721 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG582_RS01685 (HG582_01690) dprA 348728..349528 (+) 801 WP_202144111.1 DNA-processing protein DprA Machinery gene
  HG582_RS01690 (HG582_01695) dprB 349525..349929 (+) 405 WP_197301101.1 Holliday junction resolvase RuvX Machinery gene
  HG582_RS01695 (HG582_01700) - 350061..350852 (+) 792 WP_202144112.1 tetratricopeptide repeat protein -
  HG582_RS01700 (HG582_01705) - 351037..351375 (+) 339 WP_079353435.1 hypothetical protein -
  HG582_RS01705 (HG582_01710) - 351359..351919 (+) 561 WP_202144113.1 hypothetical protein -
  HG582_RS01710 (HG582_01715) - 352050..352931 (-) 882 WP_202144114.1 RluA family pseudouridine synthase -
  HG582_RS01715 (HG582_01720) recJ 352931..354481 (-) 1551 WP_202144115.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15319.88 Da        Isoelectric Point: 9.4827

>NTDB_id=439560 HG582_RS01690 WP_197301101.1 349525..349929(+) (dprB) [Helicobacter pylori strain LIM-009]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQKVLKNY

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439560 HG582_RS01690 WP_197301101.1 349525..349929(+) (dprB) [Helicobacter pylori strain LIM-009]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAAGCCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATAGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAAAAGGTTTTAAAAAATT
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948