Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG583_RS07630 | Genome accession | NZ_CP051533 |
| Coordinates | 1602104..1602679 (-) | Length | 191 a.a. |
| NCBI ID | WP_202142889.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-010 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1597104..1607679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG583_RS08595 | - | 1598788..1599345 (-) | 558 | WP_341848312.1 | restriction endonuclease subunit S | - |
| HG583_RS08600 | - | 1599372..1600035 (-) | 664 | Protein_1495 | restriction endonuclease subunit S | - |
| HG583_RS07625 (HG583_07600) | - | 1600032..1602071 (-) | 2040 | WP_202142888.1 | N-6 DNA methylase | - |
| HG583_RS07630 (HG583_07605) | comFC | 1602104..1602679 (-) | 576 | WP_202142889.1 | ComF family protein | Machinery gene |
| HG583_RS07635 (HG583_07610) | tmk | 1602667..1603242 (-) | 576 | WP_202142890.1 | dTMP kinase | - |
| HG583_RS07640 (HG583_07615) | coaD | 1603244..1603717 (-) | 474 | WP_202142891.1 | pantetheine-phosphate adenylyltransferase | - |
| HG583_RS07645 (HG583_07620) | - | 1603717..1604280 (-) | 564 | WP_000780097.1 | UbiX family flavin prenyltransferase | - |
| HG583_RS07650 (HG583_07625) | flgA | 1604290..1604946 (-) | 657 | WP_202142892.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG583_RS07655 (HG583_07630) | uvrD | 1604943..1606988 (-) | 2046 | WP_202142893.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21353.91 Da Isoelectric Point: 8.4503
>NTDB_id=439547 HG583_RS07630 WP_202142889.1 1602104..1602679(-) (comFC) [Helicobacter pylori strain LIM-010]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFIFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFIFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439547 HG583_RS07630 WP_202142889.1 1602104..1602679(-) (comFC) [Helicobacter pylori strain LIM-010]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTATTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACAACCCACGGGATTTCATTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTATTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACAACCCACGGGATTTCATTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |