Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   INP70_RS10270 Genome accession   NZ_CP063420
Coordinates   2278968..2279693 (+) Length   241 a.a.
NCBI ID   WP_000877200.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273968..2284693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS10255 clpC 2274416..2276989 (-) 2574 WP_001235058.1 ATP-dependent chaperone ClpB Regulator
  INP70_RS10260 pgeF 2277114..2277836 (-) 723 WP_000602840.1 peptidoglycan editing factor PgeF -
  INP70_RS10265 rluD 2277839..2278813 (-) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  INP70_RS10270 comL 2278968..2279693 (+) 726 WP_000877200.1 outer membrane protein assembly factor BamD Machinery gene
  INP70_RS10275 hpf 2280095..2280421 (+) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  INP70_RS10280 pheA 2280661..2281836 (+) 1176 WP_000130288.1 prephenate dehydratase -
  INP70_RS10285 - 2282018..2283058 (+) 1041 WP_000595746.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27891.68 Da        Isoelectric Point: 5.1660

>NTDB_id=439461 INP70_RS10270 WP_000877200.1 2278968..2279693(+) (comL) [Vibrio cholerae strain VC_hf7]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFSDFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=439461 INP70_RS10270 WP_000877200.1 2278968..2279693(+) (comL) [Vibrio cholerae strain VC_hf7]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTTCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAATTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGGTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378