Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HGK51_RS07150 Genome accession   NZ_CP051511
Coordinates   1477026..1477601 (-) Length   191 a.a.
NCBI ID   WP_202170732.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472026..1482601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS07140 (HGK51_07120) - 1473749..1474957 (-) 1209 WP_202170730.1 restriction endonuclease subunit S -
  HGK51_RS07145 (HGK51_07125) - 1474954..1476993 (-) 2040 WP_202170731.1 N-6 DNA methylase -
  HGK51_RS07150 (HGK51_07130) comFC 1477026..1477601 (-) 576 WP_202170732.1 ComF family protein Machinery gene
  HGK51_RS07155 (HGK51_07135) tmk 1477589..1478164 (-) 576 WP_202170733.1 dTMP kinase -
  HGK51_RS07160 (HGK51_07140) coaD 1478166..1478639 (-) 474 WP_001169286.1 pantetheine-phosphate adenylyltransferase -
  HGK51_RS07165 (HGK51_07145) - 1478639..1479202 (-) 564 WP_202170734.1 UbiX family flavin prenyltransferase -
  HGK51_RS07170 (HGK51_07150) flgA 1479212..1479868 (-) 657 WP_202170735.1 flagellar basal body P-ring formation chaperone FlgA -
  HGK51_RS07175 (HGK51_07155) uvrD 1479865..1481910 (-) 2046 WP_202132812.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21325.86 Da        Isoelectric Point: 9.0940

>NTDB_id=439423 HGK51_RS07150 WP_202170732.1 1477026..1477601(-) (comFC) [Helicobacter pylori strain ASHA-006]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439423 HGK51_RS07150 WP_202170732.1 1477026..1477601(-) (comFC) [Helicobacter pylori strain ASHA-006]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361