Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IPV38_RS27930 Genome accession   NZ_CP063396
Coordinates   6040478..6041074 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ST167_d26burn     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6035478..6046074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV38_RS27910 (IPV38_27900) aroK 6036609..6037127 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IPV38_RS27915 (IPV38_27905) pilQ 6037139..6039283 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  IPV38_RS27920 (IPV38_27910) comL/pilP 6039337..6039861 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IPV38_RS27925 (IPV38_27915) pilO 6039858..6040481 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IPV38_RS27930 (IPV38_27920) pilN 6040478..6041074 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IPV38_RS27935 (IPV38_27925) pilM 6041074..6042138 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IPV38_RS27940 (IPV38_27930) - 6042323..6044791 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=439382 IPV38_RS27930 WP_003095839.1 6040478..6041074(-) (pilN) [Pseudomonas aeruginosa strain ST167_d26burn]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=439382 IPV38_RS27930 WP_003095839.1 6040478..6041074(-) (pilN) [Pseudomonas aeruginosa strain ST167_d26burn]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369