Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG558_RS07135 Genome accession   NZ_CP051509
Coordinates   1470789..1471364 (-) Length   191 a.a.
NCBI ID   WP_202135526.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465789..1476364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS07120 (HG558_07095) - 1467480..1468058 (-) 579 WP_202166623.1 restriction endonuclease subunit S -
  HG558_RS07125 (HG558_07100) - 1468085..1468720 (-) 636 WP_202166624.1 restriction endonuclease subunit S -
  HG558_RS07130 (HG558_07105) - 1468717..1470756 (-) 2040 WP_202166625.1 N-6 DNA methylase -
  HG558_RS07135 (HG558_07110) comFC 1470789..1471364 (-) 576 WP_202135526.1 ComF family protein Machinery gene
  HG558_RS07140 (HG558_07115) tmk 1471352..1471927 (-) 576 WP_202166626.1 dTMP kinase -
  HG558_RS07145 (HG558_07120) coaD 1471929..1472402 (-) 474 WP_202166627.1 pantetheine-phosphate adenylyltransferase -
  HG558_RS07150 (HG558_07125) - 1472402..1472965 (-) 564 WP_202166628.1 UbiX family flavin prenyltransferase -
  HG558_RS07155 (HG558_07130) flgA 1472975..1473631 (-) 657 WP_180578910.1 flagellar basal body P-ring formation chaperone FlgA -
  HG558_RS07160 (HG558_07135) uvrD 1473628..1475673 (-) 2046 WP_202166629.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21250.88 Da        Isoelectric Point: 9.0940

>NTDB_id=439382 HG558_RS07135 WP_202135526.1 1470789..1471364(-) (comFC) [Helicobacter pylori strain ASHA-009]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439382 HG558_RS07135 WP_202135526.1 1470789..1471364(-) (comFC) [Helicobacter pylori strain ASHA-009]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366