Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG558_RS04860 Genome accession   NZ_CP051509
Coordinates   1016144..1016548 (-) Length   134 a.a.
NCBI ID   WP_202166419.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1011144..1021548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS04810 (HG558_04795) - 1011232..1012323 (-) 1092 WP_202166416.1 hypothetical protein -
  HG558_RS04815 (HG558_04800) - 1012313..1013098 (-) 786 WP_202166417.1 hypothetical protein -
  HG558_RS04820 (HG558_04805) - 1013098..1013485 (-) 388 Protein_946 DUF1294 domain-containing protein -
  HG558_RS07925 (HG558_04810) - 1013639..1013824 (-) 186 WP_014534380.1 hypothetical protein -
  HG558_RS07930 - 1013917..1014093 (-) 177 WP_014534379.1 hypothetical protein -
  HG558_RS08045 (HG558_04820) - 1014114..1014506 (-) 393 Protein_949 lysozyme -
  HG558_RS04845 (HG558_04825) - 1014518..1015084 (-) 567 WP_202133084.1 hypothetical protein -
  HG558_RS04850 (HG558_04830) - 1015068..1015406 (-) 339 WP_202135745.1 hypothetical protein -
  HG558_RS04855 (HG558_04835) - 1015536..1015913 (-) 378 WP_338402077.1 tetratricopeptide repeat protein -
  HG558_RS08050 - 1015947..1016015 (-) 69 Protein_953 sel1 repeat family protein -
  HG558_RS04860 (HG558_04840) dprB 1016144..1016548 (-) 405 WP_202166419.1 Holliday junction resolvase RuvX Machinery gene
  HG558_RS04865 (HG558_04845) dprA 1016545..1017345 (-) 801 WP_202166420.1 DNA-processing protein DprA Machinery gene
  HG558_RS04870 (HG558_04850) minE 1017357..1017590 (-) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG558_RS04875 (HG558_04855) minD 1017587..1018393 (-) 807 WP_187934758.1 septum site-determining protein MinD -
  HG558_RS04880 (HG558_04860) ilvC 1018412..1019404 (-) 993 WP_202166421.1 ketol-acid reductoisomerase -
  HG558_RS04890 (HG558_04870) - 1019651..1020433 (+) 783 WP_202166422.1 NAD+ synthase -
  HG558_RS04895 (HG558_04875) - 1020430..1021368 (+) 939 WP_000833954.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15196.64 Da        Isoelectric Point: 8.7194

>NTDB_id=439377 HG558_RS04860 WP_202166419.1 1016144..1016548(-) (dprB) [Helicobacter pylori strain ASHA-009]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439377 HG558_RS04860 WP_202166419.1 1016144..1016548(-) (dprB) [Helicobacter pylori strain ASHA-009]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGACTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955