Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG559_RS01615 Genome accession   NZ_CP051508
Coordinates   331024..331428 (+) Length   134 a.a.
NCBI ID   WP_202133081.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326024..336428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG559_RS01580 (HG559_01585) - 326203..327141 (-) 939 WP_202166158.1 tetraacyldisaccharide 4'-kinase -
  HG559_RS01585 (HG559_01590) - 327138..327920 (-) 783 WP_202166159.1 NAD+ synthase -
  HG559_RS01595 (HG559_01600) ilvC 328168..329160 (+) 993 WP_202166160.1 ketol-acid reductoisomerase -
  HG559_RS01600 (HG559_01605) minD 329179..329985 (+) 807 WP_202133079.1 septum site-determining protein MinD -
  HG559_RS01605 (HG559_01610) minE 329982..330215 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG559_RS01610 (HG559_01615) dprA 330227..331027 (+) 801 WP_202133080.1 DNA-processing protein DprA Machinery gene
  HG559_RS01615 (HG559_01620) dprB 331024..331428 (+) 405 WP_202133081.1 Holliday junction resolvase RuvX Machinery gene
  HG559_RS01620 (HG559_01625) - 331556..332236 (+) 681 WP_202148237.1 tetratricopeptide repeat protein -
  HG559_RS01625 (HG559_01630) - 332432..332770 (+) 339 WP_202135745.1 hypothetical protein -
  HG559_RS01630 (HG559_01635) - 332754..333320 (+) 567 WP_202166161.1 hypothetical protein -
  HG559_RS01635 (HG559_01640) - 333332..333580 (+) 249 WP_237393354.1 lysozyme -
  HG559_RS07875 - 333595..333921 (+) 327 WP_237393355.1 hypothetical protein -
  HG559_RS07880 (HG559_01650) - 334007..334192 (+) 186 WP_014534380.1 hypothetical protein -
  HG559_RS01650 (HG559_01655) - 334346..334732 (+) 387 WP_202133397.1 DUF1294 domain-containing protein -
  HG559_RS01655 (HG559_01660) - 334732..335517 (+) 786 WP_202135746.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15094.55 Da        Isoelectric Point: 9.1727

>NTDB_id=439354 HG559_RS01615 WP_202133081.1 331024..331428(+) (dprB) [Helicobacter pylori strain ASHA-010]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439354 HG559_RS01615 WP_202133081.1 331024..331428(+) (dprB) [Helicobacter pylori strain ASHA-010]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAGGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955