Detailed information NTG0439332

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: HG560_RS01930
• Genome accession: NZ_CP051507
• Coordinates: 407459..408259 (+)
• Length: 266 a.a.
• NCBI ID: WP_202170346.1
• Uniprot ID: A0AAE7TS37
• Organism: Helicobacter pylori strain SHIM-002
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 402459..413259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG560_RS01895 (HG560_01890)	pseH	402961..403503 (+)	543	WP_000742581.1	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	-
HG560_RS01900 (HG560_01895)	-	403436..404374 (-)	939	WP_000833938.1	tetraacyldisaccharide 4'-kinase	-
HG560_RS01905 (HG560_01900)	-	404371..405153 (-)	783	WP_001168078.1	NAD+ synthase	-
HG560_RS01915 (HG560_01910)	ilvC	405400..406392 (+)	993	WP_001207777.1	ketol-acid reductoisomerase	-
HG560_RS01920 (HG560_01915)	minD	406411..407217 (+)	807	WP_001019023.1	septum site-determining protein MinD	-
HG560_RS01925 (HG560_01920)	minE	407214..407447 (+)	234	WP_000051411.1	cell division topological specificity factor MinE	-
HG560_RS01930 (HG560_01925)	dprA	407459..408259 (+)	801	WP_202170346.1	DNA-processing protein DprA	Machinery gene
HG560_RS01935 (HG560_01930)	dprB	408256..408660 (+)	405	WP_000599165.1	Holliday junction resolvase RuvX	Machinery gene
HG560_RS01940 (HG560_01935)	-	408834..409260 (+)	427	Protein_384	tetratricopeptide repeat protein	-
HG560_RS01945 (HG560_01940)	-	409454..409792 (+)	339	WP_000699918.1	hypothetical protein	-
HG560_RS01950 (HG560_01945)	-	409776..410336 (+)	561	WP_000037125.1	hypothetical protein	-
HG560_RS01955 (HG560_01950)	-	410493..411374 (-)	882	WP_001117116.1	RluA family pseudouridine synthase	-
HG560_RS01960 (HG560_01955)	recJ	411374..412924 (-)	1551	WP_000810779.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29727.62 Da
• Isoelectric Point: 8.2306

>NTDB_id=439332 HG560_RS01930 WP_202170346.1 407459..408259(+) (dprA) [Helicobacter pylori strain SHIM-002]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDTKLLDAPLKVAIIGTRIPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide

• Length: 801 bp

>NTDB_id=439332 HG560_RS01930 WP_202170346.1 407459..408259(+) (dprA) [Helicobacter pylori strain SHIM-002]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGATATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACAAAGCTTTTAGATGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAATACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGTAGCGCGAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCTCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTAGAATATTGTGCCAAAAACCCAAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTGGAATACGAACTGTTGGGTAAGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (12-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Helicobacter pylori 26695	96.617	100	0.966
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.074	81.203	0.398