Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG561_RS07015 | Genome accession | NZ_CP051506 |
| Coordinates | 1452242..1452817 (-) | Length | 191 a.a. |
| NCBI ID | WP_202168399.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain SHIM-007 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1447242..1457817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG561_RS07005 (HG561_06995) | - | 1448974..1450173 (-) | 1200 | WP_202168397.1 | restriction endonuclease subunit S | - |
| HG561_RS07010 (HG561_07000) | - | 1450170..1452209 (-) | 2040 | WP_202168398.1 | N-6 DNA methylase | - |
| HG561_RS07015 (HG561_07005) | comFC | 1452242..1452817 (-) | 576 | WP_202168399.1 | ComF family protein | Machinery gene |
| HG561_RS07020 (HG561_07010) | tmk | 1452805..1453380 (-) | 576 | WP_000289750.1 | dTMP kinase | - |
| HG561_RS07025 (HG561_07015) | coaD | 1453382..1453855 (-) | 474 | WP_014662293.1 | pantetheine-phosphate adenylyltransferase | - |
| HG561_RS07030 (HG561_07020) | - | 1453855..1454418 (-) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HG561_RS07035 (HG561_07025) | flgA | 1454428..1455084 (-) | 657 | WP_000670254.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG561_RS07040 (HG561_07030) | uvrD | 1455081..1457126 (-) | 2046 | WP_202168400.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21268.85 Da Isoelectric Point: 9.0940
>NTDB_id=439319 HG561_RS07015 WP_202168399.1 1452242..1452817(-) (comFC) [Helicobacter pylori strain SHIM-007]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439319 HG561_RS07015 WP_202168399.1 1452242..1452817(-) (comFC) [Helicobacter pylori strain SHIM-007]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |