Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG561_RS01785 Genome accession   NZ_CP051506
Coordinates   359828..360232 (+) Length   134 a.a.
NCBI ID   WP_202168648.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 354828..365232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS01750 (HG561_01740) - 355008..355946 (-) 939 WP_202168644.1 tetraacyldisaccharide 4'-kinase -
  HG561_RS01755 (HG561_01745) - 355943..356725 (-) 783 WP_202168645.1 NAD+ synthase -
  HG561_RS01765 (HG561_01755) ilvC 356972..357964 (+) 993 WP_202168646.1 ketol-acid reductoisomerase -
  HG561_RS01770 (HG561_01760) minD 357983..358789 (+) 807 WP_202168647.1 septum site-determining protein MinD -
  HG561_RS01775 (HG561_01765) minE 358786..359019 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG561_RS01780 (HG561_01770) dprA 359031..359831 (+) 801 WP_000840086.1 DNA-processing protein DprA Machinery gene
  HG561_RS01785 (HG561_01775) dprB 359828..360232 (+) 405 WP_202168648.1 Holliday junction resolvase RuvX Machinery gene
  HG561_RS01790 (HG561_01780) - 360291..360449 (+) 159 WP_202168649.1 hypothetical protein -
  HG561_RS01795 (HG561_01785) - 360462..360830 (+) 369 WP_202168650.1 tetratricopeptide repeat protein -
  HG561_RS01800 (HG561_01790) - 361018..361356 (+) 339 WP_000699918.1 hypothetical protein -
  HG561_RS01805 (HG561_01795) - 361340..361906 (+) 567 WP_000037138.1 hypothetical protein -
  HG561_RS01810 (HG561_01800) - 361918..362166 (+) 249 WP_202168651.1 lysozyme -
  HG561_RS01815 (HG561_01805) - 362172..362510 (+) 339 WP_202168652.1 hypothetical protein -
  HG561_RS01820 (HG561_01810) - 362910..363297 (+) 388 Protein_354 DUF1294 domain-containing protein -
  HG561_RS01825 (HG561_01815) - 363297..364082 (+) 786 WP_202168653.1 hypothetical protein -
  HG561_RS01830 (HG561_01820) - 364072..365157 (+) 1086 WP_202168654.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15243.79 Da        Isoelectric Point: 8.8305

>NTDB_id=439311 HG561_RS01785 WP_202168648.1 359828..360232(+) (dprB) [Helicobacter pylori strain SHIM-007]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439311 HG561_RS01785 WP_202168648.1 359828..360232(+) (dprB) [Helicobacter pylori strain SHIM-007]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948