Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG562_RS01935 Genome accession   NZ_CP051505
Coordinates   408266..408670 (+) Length   134 a.a.
NCBI ID   WP_000599165.1    Uniprot ID   A0AAE7TSC0
Organism   Helicobacter pylori strain SHIM-010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 403266..413670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS01900 (HG562_01900) - 403446..404384 (-) 939 WP_000833938.1 tetraacyldisaccharide 4'-kinase -
  HG562_RS01905 (HG562_01905) - 404381..405163 (-) 783 WP_001168078.1 NAD+ synthase -
  HG562_RS01915 (HG562_01915) ilvC 405410..406402 (+) 993 WP_001207777.1 ketol-acid reductoisomerase -
  HG562_RS01920 (HG562_01920) minD 406421..407227 (+) 807 WP_001019023.1 septum site-determining protein MinD -
  HG562_RS01925 (HG562_01925) minE 407224..407457 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG562_RS01930 (HG562_01930) dprA 407469..408269 (+) 801 WP_202170346.1 DNA-processing protein DprA Machinery gene
  HG562_RS01935 (HG562_01935) dprB 408266..408670 (+) 405 WP_000599165.1 Holliday junction resolvase RuvX Machinery gene
  HG562_RS01940 (HG562_01940) - 408843..409269 (+) 427 Protein_382 tetratricopeptide repeat protein -
  HG562_RS01945 (HG562_01945) - 409463..409801 (+) 339 WP_000699918.1 hypothetical protein -
  HG562_RS01950 (HG562_01950) - 409785..410345 (+) 561 WP_000037125.1 hypothetical protein -
  HG562_RS01955 (HG562_01955) - 410502..411383 (-) 882 WP_001117116.1 RluA family pseudouridine synthase -
  HG562_RS01960 (HG562_01960) recJ 411383..412933 (-) 1551 WP_000810779.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15154.70 Da        Isoelectric Point: 9.2303

>NTDB_id=439290 HG562_RS01935 WP_000599165.1 408266..408670(+) (dprB) [Helicobacter pylori strain SHIM-010]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439290 HG562_RS01935 WP_000599165.1 408266..408670(+) (dprB) [Helicobacter pylori strain SHIM-010]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955