Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG563_RS07025 Genome accession   NZ_CP051504
Coordinates   1467388..1467963 (-) Length   191 a.a.
NCBI ID   WP_202273386.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462388..1472963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS07015 (HG563_07015) - 1464074..1465318 (-) 1245 WP_202273385.1 restriction endonuclease subunit S -
  HG563_RS07020 (HG563_07020) - 1465315..1467355 (-) 2041 Protein_1380 N-6 DNA methylase -
  HG563_RS07025 (HG563_07025) comFC 1467388..1467963 (-) 576 WP_202273386.1 ComF family protein Machinery gene
  HG563_RS07030 (HG563_07030) tmk 1467951..1468526 (-) 576 WP_202273387.1 dTMP kinase -
  HG563_RS07035 (HG563_07035) coaD 1468528..1469001 (-) 474 WP_014662164.1 pantetheine-phosphate adenylyltransferase -
  HG563_RS07040 (HG563_07040) - 1469001..1469564 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HG563_RS07045 (HG563_07045) flgA 1469574..1470230 (-) 657 WP_202273388.1 flagellar basal body P-ring formation chaperone FlgA -
  HG563_RS07050 (HG563_07050) uvrD 1470227..1472272 (-) 2046 WP_202273389.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21241.93 Da        Isoelectric Point: 9.4455

>NTDB_id=439275 HG563_RS07025 WP_202273386.1 1467388..1467963(-) (comFC) [Helicobacter pylori strain SHIM-011]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKIMQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439275 HG563_RS07025 WP_202273386.1 1467388..1467963(-) (comFC) [Helicobacter pylori strain SHIM-011]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCATGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361