Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG563_RS01780 Genome accession   NZ_CP051504
Coordinates   371017..371421 (+) Length   134 a.a.
NCBI ID   WP_000599240.1    Uniprot ID   B2USG5
Organism   Helicobacter pylori strain SHIM-011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 366017..376421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS01745 (HG563_01745) - 366197..367135 (-) 939 WP_202273533.1 tetraacyldisaccharide 4'-kinase -
  HG563_RS01750 (HG563_01750) - 367132..367914 (-) 783 WP_001168077.1 NAD+ synthase -
  HG563_RS01760 (HG563_01760) ilvC 368161..369153 (+) 993 WP_202273534.1 ketol-acid reductoisomerase -
  HG563_RS01765 (HG563_01765) minD 369172..369978 (+) 807 WP_075645901.1 septum site-determining protein MinD -
  HG563_RS01770 (HG563_01770) minE 369975..370208 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG563_RS01775 (HG563_01775) dprA 370220..371020 (+) 801 WP_202273535.1 DNA-processing protein DprA Machinery gene
  HG563_RS01780 (HG563_01780) dprB 371017..371421 (+) 405 WP_000599240.1 Holliday junction resolvase RuvX Machinery gene
  HG563_RS01785 (HG563_01785) - 371478..372023 (+) 546 WP_202273536.1 tetratricopeptide repeat protein -
  HG563_RS01790 (HG563_01790) - 372213..372551 (+) 339 WP_000699918.1 hypothetical protein -
  HG563_RS01795 (HG563_01795) - 372535..373101 (+) 567 WP_000037139.1 hypothetical protein -
  HG563_RS01800 (HG563_01800) - 373113..373361 (+) 249 WP_237419574.1 lysozyme -
  HG563_RS07730 - 373367..373744 (+) 378 WP_012443304.1 hypothetical protein -
  HG563_RS01810 (HG563_01810) - 374106..374493 (+) 388 Protein_353 DUF1294 domain-containing protein -
  HG563_RS01815 (HG563_01815) - 374493..375278 (+) 786 WP_202273537.1 hypothetical protein -
  HG563_RS01820 (HG563_01820) - 375268..376356 (+) 1089 WP_202273538.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15149.63 Da        Isoelectric Point: 9.1727

>NTDB_id=439267 HG563_RS01780 WP_000599240.1 371017..371421(+) (dprB) [Helicobacter pylori strain SHIM-011]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLNDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439267 HG563_RS01780 WP_000599240.1 371017..371421(+) (dprB) [Helicobacter pylori strain SHIM-011]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAACGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2USG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94