Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG564_RS07040 Genome accession   NZ_CP051503
Coordinates   1472643..1473218 (-) Length   191 a.a.
NCBI ID   WP_202171832.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467643..1478218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS07030 (HG564_07015) - 1469329..1470570 (-) 1242 WP_202171831.1 restriction endonuclease subunit S -
  HG564_RS07035 (HG564_07020) - 1470571..1472610 (-) 2040 Protein_1378 N-6 DNA methylase -
  HG564_RS07040 (HG564_07025) comFC 1472643..1473218 (-) 576 WP_202171832.1 ComF family protein Machinery gene
  HG564_RS07045 (HG564_07030) tmk 1473206..1473781 (-) 576 WP_202171833.1 dTMP kinase -
  HG564_RS07050 (HG564_07035) coaD 1473783..1474256 (-) 474 WP_014662164.1 pantetheine-phosphate adenylyltransferase -
  HG564_RS07055 (HG564_07040) - 1474256..1474819 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HG564_RS07060 (HG564_07045) flgA 1474829..1475485 (-) 657 WP_000697510.1 flagellar basal body P-ring formation chaperone FlgA -
  HG564_RS07065 (HG564_07050) uvrD 1475482..1477527 (-) 2046 WP_202171834.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21208.84 Da        Isoelectric Point: 9.0940

>NTDB_id=439254 HG564_RS07040 WP_202171832.1 1472643..1473218(-) (comFC) [Helicobacter pylori strain SHIM-014]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439254 HG564_RS07040 WP_202171832.1 1472643..1473218(-) (comFC) [Helicobacter pylori strain SHIM-014]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTGCCCCTCTTTATGGTATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366