Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG564_RS01770 Genome accession   NZ_CP051503
Coordinates   370880..371284 (+) Length   134 a.a.
NCBI ID   WP_202172012.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 365880..376284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS01735 (HG564_01735) - 366060..366998 (-) 939 WP_202172009.1 tetraacyldisaccharide 4'-kinase -
  HG564_RS01740 (HG564_01740) - 366995..367777 (-) 783 WP_202172010.1 NAD+ synthase -
  HG564_RS01750 (HG564_01750) ilvC 368024..369016 (+) 993 WP_202172011.1 ketol-acid reductoisomerase -
  HG564_RS01755 (HG564_01755) minD 369035..369841 (+) 807 WP_001019023.1 septum site-determining protein MinD -
  HG564_RS01760 (HG564_01760) minE 369838..370071 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HG564_RS01765 (HG564_01765) dprA 370083..370883 (+) 801 WP_000840088.1 DNA-processing protein DprA Machinery gene
  HG564_RS01770 (HG564_01770) dprB 370880..371284 (+) 405 WP_202172012.1 Holliday junction resolvase RuvX Machinery gene
  HG564_RS01775 (HG564_01775) - 371456..371886 (+) 431 Protein_346 tetratricopeptide repeat protein -
  HG564_RS01780 (HG564_01780) - 372075..372413 (+) 339 WP_000699918.1 hypothetical protein -
  HG564_RS01785 (HG564_01785) - 372397..372963 (+) 567 WP_202172013.1 hypothetical protein -
  HG564_RS01790 (HG564_01790) - 372975..373193 (+) 219 WP_014661925.1 lysozyme -
  HG564_RS01795 (HG564_01795) - 373507..373887 (+) 381 Protein_350 DUF1294 domain-containing protein -
  HG564_RS01800 (HG564_01800) - 373887..374672 (+) 786 WP_000488067.1 hypothetical protein -
  HG564_RS01805 (HG564_01805) - 374662..375750 (+) 1089 WP_202172014.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15111.63 Da        Isoelectric Point: 8.8322

>NTDB_id=439246 HG564_RS01770 WP_202172012.1 370880..371284(+) (dprB) [Helicobacter pylori strain SHIM-014]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439246 HG564_RS01770 WP_202172012.1 370880..371284(+) (dprB) [Helicobacter pylori strain SHIM-014]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933