Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG565_RS07150 Genome accession   NZ_CP051502
Coordinates   1502644..1503219 (-) Length   191 a.a.
NCBI ID   WP_202169395.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497644..1508219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG565_RS07135 (HG565_07115) - 1499362..1499898 (-) 537 WP_237393234.1 restriction endonuclease subunit S -
  HG565_RS07140 (HG565_07120) - 1499934..1500575 (-) 642 WP_202169393.1 restriction endonuclease subunit S -
  HG565_RS07145 (HG565_07125) - 1500572..1502611 (-) 2040 WP_202169394.1 N-6 DNA methylase -
  HG565_RS07150 (HG565_07130) comFC 1502644..1503219 (-) 576 WP_202169395.1 ComF family protein Machinery gene
  HG565_RS07155 (HG565_07135) tmk 1503207..1503782 (-) 576 WP_202169396.1 dTMP kinase -
  HG565_RS07160 (HG565_07140) coaD 1503784..1504257 (-) 474 WP_001169229.1 pantetheine-phosphate adenylyltransferase -
  HG565_RS07165 (HG565_07145) - 1504257..1504820 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HG565_RS07170 (HG565_07150) flgA 1504830..1505486 (-) 657 WP_202169397.1 flagellar basal body P-ring formation chaperone FlgA -
  HG565_RS07175 (HG565_07155) uvrD 1505483..1507528 (-) 2046 WP_202169398.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21236.81 Da        Isoelectric Point: 9.0940

>NTDB_id=439233 HG565_RS07150 WP_202169395.1 1502644..1503219(-) (comFC) [Helicobacter pylori strain PUNO-001]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439233 HG565_RS07150 WP_202169395.1 1502644..1503219(-) (comFC) [Helicobacter pylori strain PUNO-001]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGTATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTGTTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361