Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG565_RS01645 Genome accession   NZ_CP051502
Coordinates   335332..335736 (+) Length   134 a.a.
NCBI ID   WP_202168648.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330332..340736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG565_RS01610 (HG565_01600) - 330515..331453 (-) 939 WP_202169699.1 tetraacyldisaccharide 4'-kinase -
  HG565_RS01615 (HG565_01605) - 331450..332232 (-) 783 WP_202169700.1 NAD+ synthase -
  HG565_RS01625 (HG565_01615) ilvC 332481..333473 (+) 993 WP_202169701.1 ketol-acid reductoisomerase -
  HG565_RS01630 (HG565_01620) minD 333492..334298 (+) 807 WP_202169702.1 septum site-determining protein MinD -
  HG565_RS01635 (HG565_01625) minE 334295..334528 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG565_RS01640 (HG565_01630) dprA 334535..335335 (+) 801 WP_202169703.1 DNA-processing protein DprA Machinery gene
  HG565_RS01645 (HG565_01635) dprB 335332..335736 (+) 405 WP_202168648.1 Holliday junction resolvase RuvX Machinery gene
  HG565_RS01650 (HG565_01640) - 335868..336662 (+) 795 WP_202169704.1 tetratricopeptide repeat protein -
  HG565_RS01655 (HG565_01645) - 336850..337188 (+) 339 WP_202169705.1 hypothetical protein -
  HG565_RS01660 (HG565_01650) - 337172..337732 (+) 561 WP_202169706.1 hypothetical protein -
  HG565_RS01665 (HG565_01655) - 337743..338069 (+) 327 WP_202169707.1 lysozyme -
  HG565_RS07845 - 338153..338317 (+) 165 WP_228921320.1 lysozyme -
  HG565_RS01675 (HG565_01665) - 338730..339105 (+) 376 Protein_323 DUF1294 domain-containing protein -
  HG565_RS01680 (HG565_01670) - 339105..339890 (+) 786 WP_202169708.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15243.79 Da        Isoelectric Point: 8.8305

>NTDB_id=439225 HG565_RS01645 WP_202168648.1 335332..335736(+) (dprB) [Helicobacter pylori strain PUNO-001]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439225 HG565_RS01645 WP_202168648.1 335332..335736(+) (dprB) [Helicobacter pylori strain PUNO-001]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTGAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCAAAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948