Detailed information NTG0439217

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG565_RS00195
• Genome accession: NZ_CP051502
• Coordinates: 32247..33302 (+)
• Length: 351 a.a.
• NCBI ID: WP_202169986.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27247..38302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG565_RS00165 (HG565_00165)	-	27666..28079 (+)	414	WP_001023005.1	universal stress protein	-
HG565_RS00170 (HG565_00170)	-	28094..28369 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HG565_RS00175 (HG565_00175)	-	28369..30591 (+)	2223	WP_202169509.1	ATP-dependent Clp protease ATP-binding subunit	-
HG565_RS00180 (HG565_00180)	panD	30581..30931 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG565_RS00185 (HG565_00185)	-	30942..31244 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG565_RS00190 (HG565_00190)	-	31244..32239 (+)	996	WP_202169987.1	PDZ domain-containing protein	-
HG565_RS00195 (HG565_00195)	comB6	32247..33302 (+)	1056	WP_202169986.1	P-type conjugative transfer protein TrbL	Machinery gene
HG565_RS00200 (HG565_00200)	comB7	33318..33431 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG565_RS00205 (HG565_00205)	comB8	33428..34168 (+)	741	WP_202169510.1	virB8 family protein	Machinery gene
HG565_RS00210 (HG565_00210)	comB9	34168..35130 (+)	963	WP_202169511.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG565_RS00215 (HG565_00215)	comB10	35123..36259 (+)	1137	WP_202169512.1	DNA type IV secretion system protein ComB10	Machinery gene
HG565_RS00220 (HG565_00220)	-	36329..37741 (+)	1413	WP_202169513.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39716.67 Da
• Isoelectric Point: 8.8165

>NTDB_id=439217 HG565_RS00195 WP_202169986.1 32247..33302(+) (comB6) [Helicobacter pylori strain PUNO-001]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLGANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439217 HG565_RS00195 WP_202169986.1 32247..33302(+) (comB6) [Helicobacter pylori strain PUNO-001]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCCTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTATATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGTCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTATTGG
TGGGATTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCACATATGCAAGAAAAACAGGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGGGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.291	100	0.983