Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG566_RS06830 | Genome accession | NZ_CP051501 |
| Coordinates | 1423307..1423882 (-) | Length | 191 a.a. |
| NCBI ID | WP_202164399.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-002 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1418307..1428882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG566_RS06820 (HG566_06820) | - | 1420018..1421238 (-) | 1221 | WP_202164396.1 | restriction endonuclease subunit S | - |
| HG566_RS06825 (HG566_06825) | - | 1421235..1423274 (-) | 2040 | WP_202164398.1 | N-6 DNA methylase | - |
| HG566_RS06830 (HG566_06830) | comFC | 1423307..1423882 (-) | 576 | WP_202164399.1 | ComF family protein | Machinery gene |
| HG566_RS06835 (HG566_06835) | tmk | 1423870..1424445 (-) | 576 | WP_202164400.1 | dTMP kinase | - |
| HG566_RS06840 (HG566_06840) | coaD | 1424633..1425124 (-) | 492 | WP_202164401.1 | pantetheine-phosphate adenylyltransferase | - |
| HG566_RS06845 (HG566_06845) | - | 1425124..1425687 (-) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| HG566_RS06850 (HG566_06850) | flgA | 1425697..1426353 (-) | 657 | WP_202164402.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG566_RS06855 (HG566_06855) | uvrD | 1426350..1428395 (-) | 2046 | WP_202164403.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21263.92 Da Isoelectric Point: 9.4455
>NTDB_id=439212 HG566_RS06830 WP_202164399.1 1423307..1423882(-) (comFC) [Helicobacter pylori strain PUNO-002]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439212 HG566_RS06830 WP_202164399.1 1423307..1423882(-) (comFC) [Helicobacter pylori strain PUNO-002]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCAGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCAGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTACTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |