Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   IPV39_RS03760 Genome accession   NZ_CP063395
Coordinates   791576..794413 (-) Length   945 a.a.
NCBI ID   WP_003110572.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST167_d57blood     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786576..799413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV39_RS03730 (IPV39_03730) rpsK 786696..787085 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  IPV39_RS03735 (IPV39_03735) rpsD 787102..787722 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  IPV39_RS03740 (IPV39_03740) rpoA 787745..788746 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  IPV39_RS03745 (IPV39_03745) rplQ 788790..789179 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  IPV39_RS03750 (IPV39_03750) katA 789461..790909 (+) 1449 WP_023085900.1 catalase KatA -
  IPV39_RS03755 (IPV39_03755) bfr 791040..791504 (+) 465 WP_003093668.1 bacterioferritin -
  IPV39_RS03760 (IPV39_03760) uvrA 791576..794413 (-) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  IPV39_RS03765 (IPV39_03765) - 794627..796015 (+) 1389 WP_003103910.1 MFS transporter -
  IPV39_RS03770 (IPV39_03770) ssb 796032..796529 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  IPV39_RS03775 (IPV39_03775) pchA 796618..798048 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  IPV39_RS03780 (IPV39_03780) pchB 798045..798350 (-) 306 WP_009877106.1 isochorismate lyase PchB -
  IPV39_RS03785 (IPV39_03785) pchC 798350..799105 (-) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104519.15 Da        Isoelectric Point: 6.6074

>NTDB_id=439209 IPV39_RS03760 WP_003110572.1 791576..794413(-) (uvrA) [Pseudomonas aeruginosa strain ST167_d57blood]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGTEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=439209 IPV39_RS03760 WP_003110572.1 791576..794413(-) (uvrA) [Pseudomonas aeruginosa strain ST167_d57blood]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAGTTCTTCGACGCGCGCC
GGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCACCGAACACCAGAAGGTGGT
GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGCTCGCACCCCT
TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAGCGCCTGCTCGGCACCCTCACCCACC
TGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC
GGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGA
AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGG
GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCAATCACCGCCACCGCGCTGAACGGCGCGACTAC
CCTGGAAGTGGCGCCGTATGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG
GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG
CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC
GACCACCCTCTCGGGCGGCGAGGCACAACGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGA
GGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC
ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.233

100

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.233

100

0.574
  uvrA Streptococcus pneumoniae D39

57.233

100

0.574