Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG566_RS06395 Genome accession   NZ_CP051501
Coordinates   1326410..1327723 (-) Length   437 a.a.
NCBI ID   WP_202164337.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321410..1332723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS06365 (HG566_06365) nadC 1321873..1322694 (-) 822 WP_202164333.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG566_RS06370 (HG566_06370) nadA 1322694..1323704 (-) 1011 WP_202164334.1 quinolinate synthase NadA -
  HG566_RS06375 (HG566_06375) - 1323694..1324497 (-) 804 WP_202145719.1 phosphatidylserine decarboxylase -
  HG566_RS06380 (HG566_06380) - 1324494..1324997 (-) 504 WP_202164335.1 helix-turn-helix domain-containing protein -
  HG566_RS06385 (HG566_06385) - 1325010..1325504 (-) 495 WP_202164336.1 hypothetical protein -
  HG566_RS06390 (HG566_06390) mqnP 1325497..1326381 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG566_RS06395 (HG566_06395) comEC/comE3 1326410..1327723 (-) 1314 WP_202164337.1 ComEC/Rec2 family competence protein Machinery gene
  HG566_RS06400 (HG566_06400) - 1327720..1329186 (-) 1467 WP_202164338.1 replicative DNA helicase -
  HG566_RS06405 (HG566_06405) - 1329197..1330591 (-) 1395 WP_202164339.1 NAD(P)H-hydrate dehydratase -
  HG566_RS06410 (HG566_06410) crdS 1330594..1331796 (-) 1203 WP_202165331.1 copper-sensing histidine kinase CrdS -
  HG566_RS06415 (HG566_06415) crdR 1331762..1332403 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50205.22 Da        Isoelectric Point: 9.8918

>NTDB_id=439210 HG566_RS06395 WP_202164337.1 1326410..1327723(-) (comEC/comE3) [Helicobacter pylori strain PUNO-002]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439210 HG566_RS06395 WP_202164337.1 1326410..1327723(-) (comEC/comE3) [Helicobacter pylori strain PUNO-002]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAACTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAGATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGTATTCC
TTTGGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952