Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG566_RS01625 Genome accession   NZ_CP051501
Coordinates   329955..330359 (+) Length   134 a.a.
NCBI ID   WP_096482564.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 324955..335359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS01590 (HG566_01595) - 325128..326066 (-) 939 WP_202164852.1 tetraacyldisaccharide 4'-kinase -
  HG566_RS01595 (HG566_01600) - 326063..326845 (-) 783 WP_202164853.1 NAD+ synthase -
  HG566_RS01605 (HG566_01610) ilvC 327094..328086 (+) 993 WP_202164854.1 ketol-acid reductoisomerase -
  HG566_RS01610 (HG566_01615) minD 328110..328916 (+) 807 WP_202164855.1 septum site-determining protein MinD -
  HG566_RS01615 (HG566_01620) minE 328913..329146 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HG566_RS01620 (HG566_01625) dprA 329158..329958 (+) 801 WP_000840088.1 DNA-processing protein DprA Machinery gene
  HG566_RS01625 (HG566_01630) dprB 329955..330359 (+) 405 WP_096482564.1 Holliday junction resolvase RuvX Machinery gene
  HG566_RS07540 - 330485..330979 (+) 495 Protein_318 tetratricopeptide repeat protein -
  HG566_RS07545 - 331061..331648 (+) 588 WP_237393400.1 tetratricopeptide repeat protein -
  HG566_RS01635 (HG566_01640) - 331837..332175 (+) 339 WP_000699912.1 hypothetical protein -
  HG566_RS01640 (HG566_01645) - 332159..332725 (+) 567 WP_202164858.1 hypothetical protein -
  HG566_RS01645 (HG566_01650) - 332737..333315 (+) 579 WP_237393388.1 glycoside hydrolase family protein -
  HG566_RS01650 (HG566_01655) - 333730..334116 (+) 387 WP_202164859.1 DUF1294 domain-containing protein -
  HG566_RS01655 (HG566_01660) - 334116..334901 (+) 786 WP_202164860.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15266.73 Da        Isoelectric Point: 8.7193

>NTDB_id=439204 HG566_RS01625 WP_096482564.1 329955..330359(+) (dprB) [Helicobacter pylori strain PUNO-002]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439204 HG566_RS01625 WP_096482564.1 329955..330359(+) (dprB) [Helicobacter pylori strain PUNO-002]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTTCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963