Detailed information NTG0439196

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG566_RS00190
• Genome accession: NZ_CP051501
• Coordinates: 32345..33400 (+)
• Length: 351 a.a.
• NCBI ID: WP_202165268.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27345..38400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG566_RS00160 (HG566_00160)	-	27758..28171 (+)	414	WP_001023006.1	universal stress protein	-
HG566_RS00165 (HG566_00165)	-	28186..28461 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HG566_RS00170 (HG566_00170)	-	28461..30683 (+)	2223	WP_202164566.1	ATP-dependent Clp protease ATP-binding subunit	-
HG566_RS00175 (HG566_00175)	panD	30673..31023 (+)	351	WP_202164567.1	aspartate 1-decarboxylase	-
HG566_RS00180 (HG566_00180)	-	31034..31327 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG566_RS00185 (HG566_00185)	-	31327..32337 (+)	1011	WP_202165270.1	PDZ domain-containing protein	-
HG566_RS00190 (HG566_00190)	comB6	32345..33400 (+)	1056	WP_202165268.1	P-type conjugative transfer protein TrbL	Machinery gene
HG566_RS00195 (HG566_00195)	comB7	33416..33541 (+)	126	WP_202164568.1	comB7 lipoprotein	Machinery gene
HG566_RS00200 (HG566_00200)	comB8	33538..34281 (+)	744	WP_202164569.1	virB8 family protein	Machinery gene
HG566_RS00205 (HG566_00205)	comB9	34281..35246 (+)	966	WP_202164570.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG566_RS00210 (HG566_00210)	comB10	35239..36375 (+)	1137	WP_202164571.1	DNA type IV secretion system protein ComB10	Machinery gene
HG566_RS00215 (HG566_00215)	-	36445..37857 (+)	1413	WP_202164572.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39669.61 Da
• Isoelectric Point: 9.0406

>NTDB_id=439196 HG566_RS00190 WP_202165268.1 32345..33400(+) (comB6) [Helicobacter pylori strain PUNO-002]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439196 HG566_RS00190 WP_202165268.1 32345..33400(+) (comB6) [Helicobacter pylori strain PUNO-002]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966