Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG567_RS07240 | Genome accession | NZ_CP051500 |
| Coordinates | 1528186..1528761 (+) | Length | 191 a.a. |
| NCBI ID | WP_202139660.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-003 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1523186..1533761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG567_RS07215 (HG567_07190) | uvrD | 1523877..1525922 (+) | 2046 | WP_202139657.1 | DNA helicase UvrD | - |
| HG567_RS07220 (HG567_07195) | flgA | 1525919..1526575 (+) | 657 | WP_202163800.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG567_RS07225 (HG567_07200) | - | 1526585..1527148 (+) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| HG567_RS07230 (HG567_07205) | coaD | 1527148..1527621 (+) | 474 | WP_202139659.1 | pantetheine-phosphate adenylyltransferase | - |
| HG567_RS07235 (HG567_07210) | tmk | 1527623..1528198 (+) | 576 | WP_202137972.1 | dTMP kinase | - |
| HG567_RS07240 (HG567_07215) | comFC | 1528186..1528761 (+) | 576 | WP_202139660.1 | ComF family protein | Machinery gene |
| HG567_RS07245 (HG567_07220) | - | 1528795..1530834 (+) | 2040 | WP_202163801.1 | N-6 DNA methylase | - |
| HG567_RS07250 (HG567_07225) | - | 1530831..1532076 (+) | 1246 | Protein_1431 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21295.84 Da Isoelectric Point: 8.6823
>NTDB_id=439192 HG567_RS07240 WP_202139660.1 1528186..1528761(+) (comFC) [Helicobacter pylori strain PUNO-003]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439192 HG567_RS07240 WP_202139660.1 1528186..1528761(+) (comFC) [Helicobacter pylori strain PUNO-003]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |