Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG568_RS06980 Genome accession   NZ_CP051499
Coordinates   1470553..1471128 (-) Length   191 a.a.
NCBI ID   WP_202167500.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465553..1476128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS06970 (HG568_06960) - 1467294..1468487 (-) 1194 WP_202167498.1 restriction endonuclease subunit S -
  HG568_RS06975 (HG568_06965) - 1468484..1470520 (-) 2037 WP_202167499.1 N-6 DNA methylase -
  HG568_RS06980 (HG568_06970) comFC 1470553..1471128 (-) 576 WP_202167500.1 ComF family protein Machinery gene
  HG568_RS06985 (HG568_06975) tmk 1471116..1471691 (-) 576 WP_202167501.1 dTMP kinase -
  HG568_RS06990 (HG568_06980) coaD 1471693..1472166 (-) 474 WP_202167502.1 pantetheine-phosphate adenylyltransferase -
  HG568_RS06995 (HG568_06985) - 1472166..1472729 (-) 564 WP_000780095.1 UbiX family flavin prenyltransferase -
  HG568_RS07000 (HG568_06990) flgA 1472739..1473395 (-) 657 WP_202167503.1 flagellar basal body P-ring formation chaperone FlgA -
  HG568_RS07005 (HG568_06995) uvrD 1473392..1475437 (-) 2046 WP_202168117.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21238.92 Da        Isoelectric Point: 9.6209

>NTDB_id=439168 HG568_RS06980 WP_202167500.1 1470553..1471128(-) (comFC) [Helicobacter pylori strain PUNO-004]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFIFKGNKNLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIVLCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439168 HG568_RS06980 WP_202167500.1 1470553..1471128(-) (comFC) [Helicobacter pylori strain PUNO-004]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCATCTTCAAAGGCAATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGTGCTTTG
TAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

92.147

100

0.921
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361