Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG568_RS01655 Genome accession   NZ_CP051499
Coordinates   340302..340706 (+) Length   134 a.a.
NCBI ID   WP_202167799.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335302..345706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS01620 (HG568_01620) - 335475..336413 (-) 939 WP_202140928.1 tetraacyldisaccharide 4'-kinase -
  HG568_RS01625 (HG568_01625) - 336410..337192 (-) 783 WP_202167795.1 NAD+ synthase -
  HG568_RS01635 (HG568_01635) ilvC 337441..338433 (+) 993 WP_202167796.1 ketol-acid reductoisomerase -
  HG568_RS01640 (HG568_01640) minD 338457..339263 (+) 807 WP_202167797.1 septum site-determining protein MinD -
  HG568_RS01645 (HG568_01645) minE 339260..339493 (+) 234 WP_001916961.1 cell division topological specificity factor MinE -
  HG568_RS01650 (HG568_01650) dprA 339505..340305 (+) 801 WP_202167798.1 DNA-processing protein DprA Machinery gene
  HG568_RS01655 (HG568_01655) dprB 340302..340706 (+) 405 WP_202167799.1 Holliday junction resolvase RuvX Machinery gene
  HG568_RS07670 - 340830..341516 (+) 687 Protein_323 tetratricopeptide repeat protein -
  HG568_RS07675 - 341520..342107 (+) 588 WP_237393443.1 tetratricopeptide repeat protein -
  HG568_RS01665 (HG568_01665) - 342294..342632 (+) 339 WP_202167801.1 hypothetical protein -
  HG568_RS01670 (HG568_01670) - 342616..343176 (+) 561 WP_202167802.1 hypothetical protein -
  HG568_RS01675 (HG568_01675) - 343187..343525 (+) 339 WP_202167803.1 lysozyme -
  HG568_RS07680 - 343485..343766 (+) 282 WP_237393429.1 hypothetical protein -
  HG568_RS01685 (HG568_01685) - 344193..344574 (+) 382 Protein_329 DUF1294 domain-containing protein -
  HG568_RS01690 (HG568_01690) - 344574..345359 (+) 786 WP_202167804.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15214.70 Da        Isoelectric Point: 9.1718

>NTDB_id=439161 HG568_RS01655 WP_202167799.1 340302..340706(+) (dprB) [Helicobacter pylori strain PUNO-004]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439161 HG568_RS01655 WP_202167799.1 340302..340706(+) (dprB) [Helicobacter pylori strain PUNO-004]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCAAAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGTGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948