Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG569_RS07175 Genome accession   NZ_CP051498
Coordinates   1502374..1502949 (-) Length   191 a.a.
NCBI ID   WP_202272547.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497374..1507949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG569_RS07155 (HG569_07155) - 1498467..1498706 (+) 240 WP_000777864.1 helix-turn-helix transcriptional regulator -
  HG569_RS07160 (HG569_07160) - 1498703..1499710 (+) 1008 WP_187833143.1 DNA adenine methylase -
  HG569_RS07165 (HG569_07165) - 1499714..1500853 (+) 1140 WP_202272543.1 DNA methyltransferase -
  HG569_RS07170 (HG569_07170) - 1500916..1502364 (+) 1449 WP_202272545.1 hypothetical protein -
  HG569_RS07175 (HG569_07175) comFC 1502374..1502949 (-) 576 WP_202272547.1 ComF family protein Machinery gene
  HG569_RS07180 (HG569_07180) tmk 1502937..1503512 (-) 576 WP_202272549.1 dTMP kinase -
  HG569_RS07185 (HG569_07185) coaD 1503514..1503987 (-) 474 WP_202272551.1 pantetheine-phosphate adenylyltransferase -
  HG569_RS07190 (HG569_07190) - 1503987..1504550 (-) 564 WP_000780097.1 UbiX family flavin prenyltransferase -
  HG569_RS07195 (HG569_07195) flgA 1504560..1505216 (-) 657 WP_202272553.1 flagellar basal body P-ring formation chaperone FlgA -
  HG569_RS07200 (HG569_07200) uvrD 1505213..1507258 (-) 2046 WP_202272555.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21225.83 Da        Isoelectric Point: 9.4455

>NTDB_id=439148 HG569_RS07175 WP_202272547.1 1502374..1502949(-) (comFC) [Helicobacter pylori strain PUNO-006]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439148 HG569_RS07175 WP_202272547.1 1502374..1502949(-) (comFC) [Helicobacter pylori strain PUNO-006]
ATGCGCTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTTATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361