Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG569_RS00210 Genome accession   NZ_CP051498
Coordinates   35867..36610 (+) Length   247 a.a.
NCBI ID   WP_202272695.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30867..41610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG569_RS00185 (HG569_00185) panD 33017..33367 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HG569_RS00190 (HG569_00190) - 33378..33671 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG569_RS00195 (HG569_00195) - 33671..34678 (+) 1008 WP_202273158.1 PDZ domain-containing protein -
  HG569_RS00200 (HG569_00200) comB6 34686..35741 (+) 1056 WP_202273157.1 P-type conjugative transfer protein TrbL Machinery gene
  HG569_RS00205 (HG569_00205) comB7 35757..35870 (+) 114 WP_202272694.1 comB7 lipoprotein Machinery gene
  HG569_RS00210 (HG569_00210) comB8 35867..36610 (+) 744 WP_202272695.1 virB8 family protein Machinery gene
  HG569_RS00215 (HG569_00215) comB9 36610..37575 (+) 966 WP_202272696.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG569_RS00220 (HG569_00220) comB10 37568..38704 (+) 1137 WP_202272697.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG569_RS00225 (HG569_00225) - 38774..40186 (+) 1413 WP_202272698.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG569_RS00230 (HG569_00230) gmd 40201..41346 (+) 1146 WP_128033527.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28613.83 Da        Isoelectric Point: 8.9830

>NTDB_id=439134 HG569_RS00210 WP_202272695.1 35867..36610(+) (comB8) [Helicobacter pylori strain PUNO-006]
MKEKPFNSEQLAFLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSSEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439134 HG569_RS00210 WP_202272695.1 35867..36610(+) (comB8) [Helicobacter pylori strain PUNO-006]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAG
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTAGTTTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964