Detailed information NTG0439132

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG569_RS00200
• Genome accession: NZ_CP051498
• Coordinates: 34686..35741 (+)
• Length: 351 a.a.
• NCBI ID: WP_202273157.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-006
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29686..40741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG569_RS00170 (HG569_00170)	-	30102..30515 (+)	414	WP_001023008.1	universal stress protein	-
HG569_RS00175 (HG569_00175)	-	30530..30805 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HG569_RS00180 (HG569_00180)	-	30805..33027 (+)	2223	WP_202272693.1	ATP-dependent Clp protease ATP-binding subunit	-
HG569_RS00185 (HG569_00185)	panD	33017..33367 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG569_RS00190 (HG569_00190)	-	33378..33671 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG569_RS00195 (HG569_00195)	-	33671..34678 (+)	1008	WP_202273158.1	PDZ domain-containing protein	-
HG569_RS00200 (HG569_00200)	comB6	34686..35741 (+)	1056	WP_202273157.1	P-type conjugative transfer protein TrbL	Machinery gene
HG569_RS00205 (HG569_00205)	comB7	35757..35870 (+)	114	WP_202272694.1	comB7 lipoprotein	Machinery gene
HG569_RS00210 (HG569_00210)	comB8	35867..36610 (+)	744	WP_202272695.1	virB8 family protein	Machinery gene
HG569_RS00215 (HG569_00215)	comB9	36610..37575 (+)	966	WP_202272696.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG569_RS00220 (HG569_00220)	comB10	37568..38704 (+)	1137	WP_202272697.1	DNA type IV secretion system protein ComB10	Machinery gene
HG569_RS00225 (HG569_00225)	-	38774..40186 (+)	1413	WP_202272698.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39800.67 Da
• Isoelectric Point: 8.5786

>NTDB_id=439132 HG569_RS00200 WP_202273157.1 34686..35741(+) (comB6) [Helicobacter pylori strain PUNO-006]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHAFSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439132 HG569_RS00200 WP_202273157.1 34686..35741(+) (comB6) [Helicobacter pylori strain PUNO-006]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGTTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTGCAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972