Detailed information NTG0439136

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG569_RS00220
• Genome accession: NZ_CP051498
• Coordinates: 37568..38704 (+)
• Length: 378 a.a.
• NCBI ID: WP_202272697.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-006
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32568..43704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG569_RS00185 (HG569_00185)	panD	33017..33367 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HG569_RS00190 (HG569_00190)	-	33378..33671 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG569_RS00195 (HG569_00195)	-	33671..34678 (+)	1008	WP_202273158.1	PDZ domain-containing protein	-
HG569_RS00200 (HG569_00200)	comB6	34686..35741 (+)	1056	WP_202273157.1	P-type conjugative transfer protein TrbL	Machinery gene
HG569_RS00205 (HG569_00205)	comB7	35757..35870 (+)	114	WP_202272694.1	comB7 lipoprotein	Machinery gene
HG569_RS00210 (HG569_00210)	comB8	35867..36610 (+)	744	WP_202272695.1	virB8 family protein	Machinery gene
HG569_RS00215 (HG569_00215)	comB9	36610..37575 (+)	966	WP_202272696.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG569_RS00220 (HG569_00220)	comB10	37568..38704 (+)	1137	WP_202272697.1	DNA type IV secretion system protein ComB10	Machinery gene
HG569_RS00225 (HG569_00225)	-	38774..40186 (+)	1413	WP_202272698.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG569_RS00230 (HG569_00230)	gmd	40201..41346 (+)	1146	WP_128033527.1	GDP-mannose 4,6-dehydratase	-
HG569_RS00235 (HG569_00235)	-	41339..42271 (+)	933	WP_202272699.1	GDP-L-fucose synthase	-
HG569_RS00240 (HG569_00240)	hypE	42535..43533 (-)	999	WP_202272700.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42158.73 Da
• Isoelectric Point: 9.9924

>NTDB_id=439136 HG569_RS00220 WP_202272697.1 37568..38704(+) (comB10) [Helicobacter pylori strain PUNO-006]
MNKWLKGALVFVGGFATIVTTSLIYHQKPKTPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLR

Nucleotide

• Length: 1137 bp

>NTDB_id=439136 HG569_RS00220 WP_202272697.1 37568..38704(+) (comB10) [Helicobacter pylori strain PUNO-006]
ATGAATAAGTGGCTTAAGGGAGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAACCTCTTTAATCTATCATCA
AAAGCCAAAAACCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAGCAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACGGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAGGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955