Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HG570_RS07000 | Genome accession | NZ_CP051497 |
| Coordinates | 1486236..1486811 (-) | Length | 191 a.a. |
| NCBI ID | WP_202141634.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-007 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1481236..1491811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG570_RS06990 (HG570_06990) | - | 1482975..1484168 (-) | 1194 | WP_202141632.1 | restriction endonuclease subunit S | - |
| HG570_RS06995 (HG570_06995) | - | 1484165..1486204 (-) | 2040 | WP_202141633.1 | N-6 DNA methylase | - |
| HG570_RS07000 (HG570_07000) | comFC | 1486236..1486811 (-) | 576 | WP_202141634.1 | ComF family protein | Machinery gene |
| HG570_RS07005 (HG570_07005) | tmk | 1486799..1487374 (-) | 576 | WP_202141635.1 | dTMP kinase | - |
| HG570_RS07010 (HG570_07010) | coaD | 1487376..1487849 (-) | 474 | WP_001169229.1 | pantetheine-phosphate adenylyltransferase | - |
| HG570_RS07015 (HG570_07015) | - | 1487849..1488412 (-) | 564 | WP_202141636.1 | UbiX family flavin prenyltransferase | - |
| HG570_RS07020 (HG570_07020) | flgA | 1488422..1489078 (-) | 657 | WP_202141637.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HG570_RS07025 (HG570_07025) | uvrD | 1489075..1491120 (-) | 2046 | WP_202141638.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21291.93 Da Isoelectric Point: 9.4455
>NTDB_id=439127 HG570_RS07000 WP_202141634.1 1486236..1486811(-) (comFC) [Helicobacter pylori strain PUNO-007]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=439127 HG570_RS07000 WP_202141634.1 1486236..1486811(-) (comFC) [Helicobacter pylori strain PUNO-007]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTGCCAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTGCCAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |