Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG570_RS01620 Genome accession   NZ_CP051497
Coordinates   335863..336267 (+) Length   134 a.a.
NCBI ID   WP_202141993.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330863..341267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG570_RS01585 (HG570_01585) - 331043..331981 (-) 939 WP_202141988.1 tetraacyldisaccharide 4'-kinase -
  HG570_RS01590 (HG570_01590) - 331978..332760 (-) 783 WP_202141990.1 NAD+ synthase -
  HG570_RS01600 (HG570_01600) ilvC 333007..333999 (+) 993 WP_202141992.1 ketol-acid reductoisomerase -
  HG570_RS01605 (HG570_01605) minD 334018..334824 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  HG570_RS01610 (HG570_01610) minE 334821..335054 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HG570_RS01615 (HG570_01615) dprA 335066..335866 (+) 801 WP_199496197.1 DNA-processing protein DprA Machinery gene
  HG570_RS01620 (HG570_01620) dprB 335863..336267 (+) 405 WP_202141993.1 Holliday junction resolvase RuvX Machinery gene
  HG570_RS01625 (HG570_01625) - 336364..336966 (+) 603 WP_237393323.1 tetratricopeptide repeat protein -
  HG570_RS01630 (HG570_01630) - 337161..337499 (+) 339 WP_202141995.1 hypothetical protein -
  HG570_RS01635 (HG570_01635) - 337483..338049 (+) 567 WP_202141997.1 hypothetical protein -
  HG570_RS07855 (HG570_01640) - 338471..338738 (+) 268 Protein_320 lysozyme -
  HG570_RS01645 (HG570_01645) - 339061..339447 (+) 387 WP_202141998.1 DUF1294 domain-containing protein -
  HG570_RS01650 (HG570_01650) - 339447..340232 (+) 786 WP_202142000.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15313.83 Da        Isoelectric Point: 9.5494

>NTDB_id=439120 HG570_RS01620 WP_202141993.1 335863..336267(+) (dprB) [Helicobacter pylori strain PUNO-007]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDFSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439120 HG570_RS01620 WP_202141993.1 335863..336267(+) (dprB) [Helicobacter pylori strain PUNO-007]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGCGCTTTTGAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTTAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955