Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG571_RS07215 Genome accession   NZ_CP051496
Coordinates   1509454..1510029 (-) Length   191 a.a.
NCBI ID   WP_202140654.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1504454..1515029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS07200 (HG571_07205) - 1506176..1506727 (-) 552 WP_237393030.1 restriction endonuclease subunit S -
  HG571_RS07205 (HG571_07210) - 1506763..1507404 (-) 642 WP_202140653.1 restriction endonuclease subunit S -
  HG571_RS07210 (HG571_07215) - 1507401..1509421 (-) 2021 Protein_1422 N-6 DNA methylase -
  HG571_RS07215 (HG571_07220) comFC 1509454..1510029 (-) 576 WP_202140654.1 ComF family protein Machinery gene
  HG571_RS07220 (HG571_07225) tmk 1510017..1510592 (-) 576 WP_202140655.1 dTMP kinase -
  HG571_RS07225 (HG571_07230) coaD 1510594..1511067 (-) 474 WP_001169229.1 pantetheine-phosphate adenylyltransferase -
  HG571_RS07230 (HG571_07235) - 1511067..1511630 (-) 564 WP_079360480.1 UbiX family flavin prenyltransferase -
  HG571_RS07235 (HG571_07240) flgA 1511640..1512296 (-) 657 WP_202140656.1 flagellar basal body P-ring formation chaperone FlgA -
  HG571_RS07240 (HG571_07245) uvrD 1512293..1514338 (-) 2046 WP_202140657.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21271.86 Da        Isoelectric Point: 9.4455

>NTDB_id=439107 HG571_RS07215 WP_202140654.1 1509454..1510029(-) (comFC) [Helicobacter pylori strain PUNO-008]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNTVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439107 HG571_RS07215 WP_202140654.1 1509454..1510029(-) (comFC) [Helicobacter pylori strain PUNO-008]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATACTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361