Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG571_RS00210 Genome accession   NZ_CP051496
Coordinates   36380..37330 (+) Length   316 a.a.
NCBI ID   WP_202140759.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31380..42330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS00180 (HG571_00180) panD 32787..33137 (+) 351 WP_202140758.1 aspartate 1-decarboxylase -
  HG571_RS00185 (HG571_00185) - 33148..33441 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HG571_RS00190 (HG571_00190) - 33441..34448 (+) 1008 WP_202141218.1 PDZ domain-containing protein -
  HG571_RS00195 (HG571_00195) comB6 34456..35511 (+) 1056 WP_202141217.1 P-type conjugative transfer protein TrbL Machinery gene
  HG571_RS00200 (HG571_00200) comB7 35527..35640 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HG571_RS00205 (HG571_00205) comB8 35637..36380 (+) 744 WP_000660502.1 virB8 family protein Machinery gene
  HG571_RS00210 (HG571_00210) comB9 36380..37330 (+) 951 WP_202140759.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG571_RS00215 (HG571_00215) comB10 37323..38459 (+) 1137 WP_202140760.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG571_RS00220 (HG571_00220) - 38529..39941 (+) 1413 WP_202140761.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG571_RS00225 (HG571_00225) gmd 39969..41114 (+) 1146 WP_202140762.1 GDP-mannose 4,6-dehydratase -
  HG571_RS00230 (HG571_00230) - 41107..42039 (+) 933 WP_001002452.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36360.87 Da        Isoelectric Point: 9.4632

>NTDB_id=439092 HG571_RS00210 WP_202140759.1 36380..37330(+) (comB9) [Helicobacter pylori strain PUNO-008]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSKLSLM
PEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=439092 HG571_RS00210 WP_202140759.1 36380..37330(+) (comB9) [Helicobacter pylori strain PUNO-008]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCCCACAAACAACAAACCCTTAAAAGAAGAAAAAGA
AGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAGCACTAATGCAATGAAAATCGTTAAAAAAGACATTCAAAAAG
GCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATG
CCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGAT
TTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTGAAGATGTTTCGG
CTAAATGGACTTTAAGATTGGGTAAGGACTATTTGTGTATCCGCTTTATCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

91.718

100

0.946